PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G073400.2
Common NameB456_011G073400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 273aa    MW: 30139.2 Da    PI: 7.0989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G073400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000322082461255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Gorai.011G073400.2 208 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 246
                         6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.534196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-10206258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-6206250No hitNo description
Gene3DG3DSA:4.10.280.102.9E-7210252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MMAGNPSWWS MHLHPPSQHP STLLTTPSPS LFPQYVVEYS ATSLPDNQEL PQSCSQLLSG  60
GFSGEEERLC PSNFQPKKLE NWENQILNPS LRVPVVEVIK QEVTQQHSNL YGHHHASEEF  120
QAPRLPVPPA AWSQIMGTAV LSPSPRSCIT TSSSNMLDFT YNKATDGSIS NTQPPVDHSS  180
ECNSKGSGGV FKKARVQTSS SQPPLKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG  240
YIRFLQSQIE VMFLQHLPIH LYTLCMPYTP AY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1360551e-32BT136055.1 Medicago truncatula clone JCVI-FLMt-17F9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457034.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D18e-33BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0D2RIB50.0A0A0D2RIB5_G
STRINGPOPTR_0001s18660.17e-94(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.13e-26bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]